Genotype data for 60 SNP genetic markers associated with eye, hair, skin color, ABO blood group, sex, core Y-chromosome haplogroups in Kazakh population
Bukayev A. Aidarov B. Fesenko D. Saidamarova V. Ivanovsky I. Maltseva E. Naizabayeva D. Bukayeva A. Faizov B. Pylev V. Darmenov A. Skiba Y. Balanovska E. Zhabagin M.
December 2024BioMed Central Ltd
BMC Research Notes
2024#17Issue 1
Objectives: The collection of genotype data was conducted as an essential part of a pivotal research project with the goal of examining the genetic variability of skin, hair, and iris color among the Kazakh population. The data has practical application in the field of forensic DNA phenotyping (FDA). Due to the limited size of forensic databases from Central Asia (Kazakhstan), it is practically impossible to obtain an individual identification result based on forensic profiling of short tandem repeats (STRs). However, the pervasive use of the FDA necessitates validation of the currently employed set of genetic markers in a variety of global populations. No such data existed for the Kazakhs. The Phenotype Expert kit (DNA Research Center, LLC, Russia) was used for the first time in this study to collect data. Data description: The present study provides genotype data for a total of 60 SNP genetic markers, which were analyzed in a sample of 515 ethnic Kazakhs. The dataset comprises a total of 41 single nucleotide polymorphisms (SNPs) obtained from the HIrisPlex-S panel. Additionally, there are 4 SNPs specifically related to the AB0 gene, 1 marker associated with the AMELX/Y genes, and 14 SNPs corresponding to the primary haplogroups of the Y chromosome. The aforementioned data could prove valuable to researchers with an interest in investigating genetic variability and making predictions about phenotype based on eye color, hair color, skin color, AB0 blood group, gender, and biogeographic origin within the male lineage.
AB0 blood group , Eye color , Forensic DNA Phenotyping (FDA) , Hair color , Kazakh population , Microarray , Sex , Skin color , SNP Genotyping , Y-chromosome haplogroup
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National Center for Biotechnology, Astana, 010000, Kazakhstan
Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, 119991, Russian Federation
Karaganda Academy of the Ministry of Internal Affairs of the Republic of Kazakhstan Named After Barimbek Beisenov, Karaganda, 100000, Kazakhstan
DNA Research Center, LLC, Khimki, 141402, Russian Federation
Almaty Branch of the National Center for Biotechnology, Almaty, 050054, Kazakhstan
Tethys Scientific Society, Almaty, 050063, Kazakhstan
Bochkov Research Centre of Medical Genetics, Moscow, 115522, Russian Federation
National Center for Biotechnology
Engelhardt Institute of Molecular Biology
Karaganda Academy of the Ministry of Internal Affairs of the Republic of Kazakhstan Named After Barimbek Beisenov
DNA Research Center
Almaty Branch of the National Center for Biotechnology
Tethys Scientific Society
Bochkov Research Centre of Medical Genetics
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